Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXF1Q12946 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
FOXF1Q12946 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXF1Q12946 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.69■□□□□ 0.58
FOXF1Q12946 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
FOXF1Q12946 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXF1Q12946 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXF1Q12946 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
FOXF1Q12946 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXF1Q12946 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXF1Q12946 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXF1Q12946 AC005181.1-201ENST00000604782 1256 ntBASIC18.68■□□□□ 0.58
FOXF1Q12946 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXF1Q12946 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
FOXF1Q12946 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXF1Q12946 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
FOXF1Q12946 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
FOXF1Q12946 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 MIR663A-201ENST00000385250 93 ntBASIC18.67■□□□□ 0.58
FOXF1Q12946 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
FOXF1Q12946 AC026185.1-201ENST00000445748 174 ntBASIC18.67■□□□□ 0.58
FOXF1Q12946 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXF1Q12946 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.67■□□□□ 0.58
FOXF1Q12946 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXF1Q12946 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXF1Q12946 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
FOXF1Q12946 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXF1Q12946 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
FOXF1Q12946 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXF1Q12946 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXF1Q12946 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXF1Q12946 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXF1Q12946 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
FOXF1Q12946 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXF1Q12946 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXF1Q12946 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXF1Q12946 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
FOXF1Q12946 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
FOXF1Q12946 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXF1Q12946 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXF1Q12946 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.65■□□□□ 0.58
FOXF1Q12946 AL162412.1-201ENST00000567129 965 ntBASIC18.65■□□□□ 0.58
FOXF1Q12946 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 FAM21FP-204ENST00000608637 956 ntBASIC18.65■□□□□ 0.58
FOXF1Q12946 AC006128.1-201ENST00000624704 1661 ntBASIC18.65■□□□□ 0.58
FOXF1Q12946 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
FOXF1Q12946 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
FOXF1Q12946 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
FOXF1Q12946 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXF1Q12946 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXF1Q12946 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.64■□□□□ 0.58
FOXF1Q12946 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
FOXF1Q12946 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXF1Q12946 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
FOXF1Q12946 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXF1Q12946 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXF1Q12946 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXF1Q12946 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXF1Q12946 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXF1Q12946 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms