Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SRI-203ENST00000419179 1307 ntTSL 2 BASIC14.92□□□□□ -0.02
COL7A1Q02388 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 CRYGFP-201ENST00000418459 633 ntBASIC14.92□□□□□ -0.02
COL7A1Q02388 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 KRT18P22-201ENST00000402024 1347 ntBASIC14.92□□□□□ -0.02
COL7A1Q02388 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL7A1Q02388 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL7A1Q02388 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.91□□□□□ -0.02
COL7A1Q02388 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC14.91□□□□□ -0.02
COL7A1Q02388 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.91□□□□□ -0.02
COL7A1Q02388 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.91□□□□□ -0.02
COL7A1Q02388 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL7A1Q02388 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL7A1Q02388 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC14.91□□□□□ -0.02
COL7A1Q02388 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.91□□□□□ -0.02
COL7A1Q02388 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL7A1Q02388 AC092053.2-201ENST00000640557 1818 ntBASIC14.9□□□□□ -0.02
COL7A1Q02388 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 KRT18P68-201ENST00000392293 1000 ntBASIC14.9□□□□□ -0.02
COL7A1Q02388 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 SAPCD2P4-201ENST00000424595 1171 ntBASIC14.9□□□□□ -0.02
COL7A1Q02388 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC14.9□□□□□ -0.02
COL7A1Q02388 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 DECR2-212ENST00000627716 352 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.9□□□□□ -0.02
COL7A1Q02388 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.9□□□□□ -0.02
COL7A1Q02388 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL7A1Q02388 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC14.9□□□□□ -0.02
COL7A1Q02388 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL7A1Q02388 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC14.9□□□□□ -0.02
COL7A1Q02388 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL7A1Q02388 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.89□□□□□ -0.03
COL7A1Q02388 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.89□□□□□ -0.03
COL7A1Q02388 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 AC105020.6-201ENST00000621523 1217 ntBASIC14.89□□□□□ -0.03
COL7A1Q02388 AL590326.2-201ENST00000625139 305 ntBASIC14.89□□□□□ -0.03
COL7A1Q02388 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC14.89□□□□□ -0.03
COL7A1Q02388 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.89□□□□□ -0.03
COL7A1Q02388 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
COL7A1Q02388 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 CYP2D8P-201ENST00000433633 1490 ntBASIC14.89□□□□□ -0.03
COL7A1Q02388 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL7A1Q02388 RBM17P1-201ENST00000453646 1190 ntBASIC14.89□□□□□ -0.03
COL7A1Q02388 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.89□□□□□ -0.03
COL7A1Q02388 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL7A1Q02388 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC14.89□□□□□ -0.03
COL7A1Q02388 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL7A1Q02388 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 AC087633.2-202ENST00000565166 1439 ntBASIC14.88□□□□□ -0.03
COL7A1Q02388 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL7A1Q02388 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.88□□□□□ -0.03
COL7A1Q02388 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.88□□□□□ -0.03
COL7A1Q02388 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.88□□□□□ -0.03
COL7A1Q02388 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC14.88□□□□□ -0.03
COL7A1Q02388 AC120498.8-201ENST00000614275 531 ntBASIC14.88□□□□□ -0.03
COL7A1Q02388 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms