Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CDH6P55285 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH6P55285 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH6P55285 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH6P55285 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDH6P55285 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.44■■□□□ 1.02
CDH6P55285 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDH6P55285 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CDH6P55285 AC007225.1-201ENST00000566331 1836 ntBASIC21.43■■□□□ 1.02
CDH6P55285 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDH6P55285 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.43■■□□□ 1.02
CDH6P55285 MIR935-201ENST00000401179 91 ntBASIC21.43■■□□□ 1.02
CDH6P55285 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.43■■□□□ 1.02
CDH6P55285 SLC7A5P1-201ENST00000568957 537 ntBASIC21.43■■□□□ 1.02
CDH6P55285 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH6P55285 UBE2DNL-204ENST00000602536 740 ntBASIC21.43■■□□□ 1.02
CDH6P55285 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.43■■□□□ 1.02
CDH6P55285 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.43■■□□□ 1.02
CDH6P55285 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.43■■□□□ 1.02
CDH6P55285 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.43■■□□□ 1.02
CDH6P55285 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDH6P55285 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDH6P55285 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 LINC01006-201ENST00000333319 2292 ntBASIC21.42■■□□□ 1.02
CDH6P55285 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.42■■□□□ 1.02
CDH6P55285 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.42■■□□□ 1.02
CDH6P55285 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
CDH6P55285 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.42■■□□□ 1.02
CDH6P55285 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.42■■□□□ 1.02
CDH6P55285 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.42■■□□□ 1.02
CDH6P55285 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.42■■□□□ 1.02
CDH6P55285 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.42■■□□□ 1.02
CDH6P55285 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CDH6P55285 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CDH6P55285 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CDH6P55285 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 FP700111.2-201ENST00000619190 1892 ntBASIC21.41■■□□□ 1.02
CDH6P55285 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.41■■□□□ 1.02
CDH6P55285 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH6P55285 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH6P55285 KRT18P5-201ENST00000436075 1291 ntBASIC21.41■■□□□ 1.02
CDH6P55285 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.41■■□□□ 1.02
CDH6P55285 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH6P55285 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CDH6P55285 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.41■■□□□ 1.02
CDH6P55285 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CDH6P55285 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDH6P55285 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.41■■□□□ 1.02
CDH6P55285 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 RBM17P2-201ENST00000616397 1405 ntBASIC21.4■■□□□ 1.02
CDH6P55285 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH6P55285 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
CDH6P55285 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH6P55285 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.4■■□□□ 1.02
CDH6P55285 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.4■■□□□ 1.02
CDH6P55285 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH6P55285 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH6P55285 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH6P55285 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH6P55285 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.39■■□□□ 1.02
CDH6P55285 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 AC116050.2-201ENST00000612102 1779 ntBASIC21.39■■□□□ 1.01
CDH6P55285 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH6P55285 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms