Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.96■■□□□ 1.43
HMGCS2P54868 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.96■■□□□ 1.43
HMGCS2P54868 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.96■■□□□ 1.43
HMGCS2P54868 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.96■■□□□ 1.43
HMGCS2P54868 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGCS2P54868 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGCS2P54868 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGCS2P54868 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGCS2P54868 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
HMGCS2P54868 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.95■■□□□ 1.42
HMGCS2P54868 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
HMGCS2P54868 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
HMGCS2P54868 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.94■■□□□ 1.42
HMGCS2P54868 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGCS2P54868 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.94■■□□□ 1.42
HMGCS2P54868 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.94■■□□□ 1.42
HMGCS2P54868 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
HMGCS2P54868 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGCS2P54868 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
HMGCS2P54868 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGCS2P54868 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.93■■□□□ 1.42
HMGCS2P54868 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS2P54868 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS2P54868 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS2P54868 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS2P54868 SNORA78-201ENST00000459373 127 ntBASIC23.93■■□□□ 1.42
HMGCS2P54868 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.93■■□□□ 1.42
HMGCS2P54868 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGCS2P54868 AC087633.2-202ENST00000565166 1439 ntBASIC23.93■■□□□ 1.42
HMGCS2P54868 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
HMGCS2P54868 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.92■■□□□ 1.42
HMGCS2P54868 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
HMGCS2P54868 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGCS2P54868 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
HMGCS2P54868 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
HMGCS2P54868 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
HMGCS2P54868 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.92■■□□□ 1.42
HMGCS2P54868 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.92■■□□□ 1.42
HMGCS2P54868 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC23.92■■□□□ 1.42
HMGCS2P54868 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGCS2P54868 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.92■■□□□ 1.42
HMGCS2P54868 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGCS2P54868 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
HMGCS2P54868 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
HMGCS2P54868 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.91■■□□□ 1.42
HMGCS2P54868 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.91■■□□□ 1.42
HMGCS2P54868 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
HMGCS2P54868 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.91■■□□□ 1.42
HMGCS2P54868 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGCS2P54868 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
HMGCS2P54868 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 ISG20-202ENST00000379224 540 ntTSL 3 BASIC23.9■■□□□ 1.42
HMGCS2P54868 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.9■■□□□ 1.42
HMGCS2P54868 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
HMGCS2P54868 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.9■■□□□ 1.42
HMGCS2P54868 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGCS2P54868 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGCS2P54868 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
HMGCS2P54868 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
HMGCS2P54868 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
HMGCS2P54868 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
HMGCS2P54868 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
HMGCS2P54868 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.89■■□□□ 1.41
HMGCS2P54868 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.89■■□□□ 1.41
HMGCS2P54868 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 AC242852.2-201ENST00000615738 1807 ntBASIC23.89■■□□□ 1.41
HMGCS2P54868 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
HMGCS2P54868 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms