Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.49■□□□□ 0.39
PDLIM4P50479 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.49■□□□□ 0.39
PDLIM4P50479 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.49■□□□□ 0.39
PDLIM4P50479 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.49■□□□□ 0.39
PDLIM4P50479 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM4P50479 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM4P50479 AC100791.3-201ENST00000617619 330 ntBASIC17.49■□□□□ 0.39
PDLIM4P50479 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM4P50479 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM4P50479 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM4P50479 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM4P50479 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM4P50479 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.48■□□□□ 0.39
PDLIM4P50479 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM4P50479 AC073130.3-201ENST00000624389 2278 ntBASIC17.48■□□□□ 0.39
PDLIM4P50479 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM4P50479 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.48■□□□□ 0.39
PDLIM4P50479 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PDLIM4P50479 AC008687.6-201ENST00000596318 630 ntBASIC17.48■□□□□ 0.39
PDLIM4P50479 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM4P50479 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PDLIM4P50479 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM4P50479 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM4P50479 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM4P50479 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 ESRRAP1-201ENST00000400596 1257 ntBASIC17.47■□□□□ 0.39
PDLIM4P50479 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.47■□□□□ 0.39
PDLIM4P50479 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM4P50479 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.47■□□□□ 0.39
PDLIM4P50479 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PDLIM4P50479 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.47■□□□□ 0.39
PDLIM4P50479 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PDLIM4P50479 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM4P50479 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.46■□□□□ 0.39
PDLIM4P50479 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.46■□□□□ 0.39
PDLIM4P50479 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.46■□□□□ 0.39
PDLIM4P50479 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
PDLIM4P50479 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM4P50479 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.46■□□□□ 0.39
PDLIM4P50479 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PDLIM4P50479 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
PDLIM4P50479 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.46■□□□□ 0.39
PDLIM4P50479 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDLIM4P50479 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDLIM4P50479 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.45■□□□□ 0.38
PDLIM4P50479 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.45■□□□□ 0.38
PDLIM4P50479 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.45■□□□□ 0.38
PDLIM4P50479 AC010542.4-201ENST00000563151 1910 ntBASIC17.45■□□□□ 0.38
PDLIM4P50479 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 C11orf96-202ENST00000528572 1834 ntBASIC17.45■□□□□ 0.38
PDLIM4P50479 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms