Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CLK3P49761 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.46■□□□□ 0.71
CLK3P49761 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
CLK3P49761 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CLK3P49761 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.46■□□□□ 0.71
CLK3P49761 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.46■□□□□ 0.71
CLK3P49761 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 AC003102.1-202ENST00000563394 1796 ntBASIC19.46■□□□□ 0.71
CLK3P49761 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CLK3P49761 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLK3P49761 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.45■□□□□ 0.7
CLK3P49761 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.45■□□□□ 0.7
CLK3P49761 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.45■□□□□ 0.7
CLK3P49761 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.45■□□□□ 0.7
CLK3P49761 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CLK3P49761 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
CLK3P49761 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLK3P49761 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CLK3P49761 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CLK3P49761 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CLK3P49761 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.44■□□□□ 0.7
CLK3P49761 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.44■□□□□ 0.7
CLK3P49761 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.44■□□□□ 0.7
CLK3P49761 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.44■□□□□ 0.7
CLK3P49761 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.44■□□□□ 0.7
CLK3P49761 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.44■□□□□ 0.7
CLK3P49761 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.44■□□□□ 0.7
CLK3P49761 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.44■□□□□ 0.7
CLK3P49761 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLK3P49761 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLK3P49761 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLK3P49761 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.44■□□□□ 0.7
CLK3P49761 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 GABARAPL3-202ENST00000624044 1851 ntBASIC19.43■□□□□ 0.7
CLK3P49761 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CLK3P49761 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.43■□□□□ 0.7
CLK3P49761 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.43■□□□□ 0.7
CLK3P49761 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLK3P49761 MIR935-201ENST00000401179 91 ntBASIC19.43■□□□□ 0.7
CLK3P49761 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.43■□□□□ 0.7
CLK3P49761 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.43■□□□□ 0.7
CLK3P49761 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.43■□□□□ 0.7
CLK3P49761 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 MIR5787-201ENST00000611784 55 ntBASIC19.43■□□□□ 0.7
CLK3P49761 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.43■□□□□ 0.7
CLK3P49761 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.43■□□□□ 0.7
CLK3P49761 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.43■□□□□ 0.7
CLK3P49761 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CLK3P49761 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLK3P49761 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.42■□□□□ 0.7
CLK3P49761 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.42■□□□□ 0.7
CLK3P49761 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.42■□□□□ 0.7
CLK3P49761 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.42■□□□□ 0.7
CLK3P49761 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.42■□□□□ 0.7
CLK3P49761 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.42■□□□□ 0.7
CLK3P49761 AC053503.5-201ENST00000601508 636 ntBASIC19.42■□□□□ 0.7
CLK3P49761 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLK3P49761 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.42■□□□□ 0.7
CLK3P49761 AP005212.1-201ENST00000581547 1997 ntBASIC19.42■□□□□ 0.7
CLK3P49761 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.42■□□□□ 0.7
CLK3P49761 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLK3P49761 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms