Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
RFX3P48380 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.32■□□□□ 0.68
RFX3P48380 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX3P48380 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
RFX3P48380 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX3P48380 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX3P48380 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RFX3P48380 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.31■□□□□ 0.68
RFX3P48380 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RFX3P48380 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX3P48380 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX3P48380 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.31■□□□□ 0.68
RFX3P48380 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RFX3P48380 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX3P48380 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RFX3P48380 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RFX3P48380 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.3■□□□□ 0.68
RFX3P48380 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.3■□□□□ 0.68
RFX3P48380 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
RFX3P48380 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.3■□□□□ 0.68
RFX3P48380 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 KRT18P5-201ENST00000436075 1291 ntBASIC19.3■□□□□ 0.68
RFX3P48380 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.3■□□□□ 0.68
RFX3P48380 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.3■□□□□ 0.68
RFX3P48380 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RFX3P48380 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX3P48380 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
RFX3P48380 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RFX3P48380 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.29■□□□□ 0.68
RFX3P48380 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
RFX3P48380 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
RFX3P48380 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX3P48380 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RFX3P48380 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RFX3P48380 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.28■□□□□ 0.68
RFX3P48380 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.28■□□□□ 0.68
RFX3P48380 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
RFX3P48380 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
RFX3P48380 AC073130.3-201ENST00000624389 2278 ntBASIC19.28■□□□□ 0.68
RFX3P48380 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX3P48380 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.27■□□□□ 0.68
RFX3P48380 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.27■□□□□ 0.68
RFX3P48380 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
RFX3P48380 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.27■□□□□ 0.68
RFX3P48380 AL162430.1-201ENST00000480705 870 ntBASIC19.27■□□□□ 0.68
RFX3P48380 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX3P48380 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX3P48380 AC137761.2-201ENST00000561729 223 ntBASIC19.27■□□□□ 0.68
RFX3P48380 AC145350.3-201ENST00000569033 163 ntBASIC19.27■□□□□ 0.68
RFX3P48380 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms