Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 OR7E47P-201ENST00000546390 1422 ntBASIC16.71■□□□□ 0.27
CDX1P47902 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CDX1P47902 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.71■□□□□ 0.27
CDX1P47902 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.71■□□□□ 0.27
CDX1P47902 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.71■□□□□ 0.27
CDX1P47902 AL034346.1-201ENST00000568244 1277 ntBASIC16.71■□□□□ 0.27
CDX1P47902 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CDX1P47902 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.71■□□□□ 0.27
CDX1P47902 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.71■□□□□ 0.27
CDX1P47902 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CDX1P47902 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.71■□□□□ 0.26
CDX1P47902 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CDX1P47902 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.7■□□□□ 0.26
CDX1P47902 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 AC005224.4-201ENST00000583262 1652 ntBASIC16.7■□□□□ 0.26
CDX1P47902 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.7■□□□□ 0.26
CDX1P47902 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC16.7■□□□□ 0.26
CDX1P47902 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.7■□□□□ 0.26
CDX1P47902 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.7■□□□□ 0.26
CDX1P47902 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.7■□□□□ 0.26
CDX1P47902 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX1P47902 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CDX1P47902 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.69■□□□□ 0.26
CDX1P47902 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16.69■□□□□ 0.26
CDX1P47902 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.69■□□□□ 0.26
CDX1P47902 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 AC087742.1-201ENST00000575880 1738 ntBASIC16.69■□□□□ 0.26
CDX1P47902 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX1P47902 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.69■□□□□ 0.26
CDX1P47902 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX1P47902 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CDX1P47902 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX1P47902 AC079140.4-201ENST00000507448 529 ntBASIC16.68■□□□□ 0.26
CDX1P47902 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.68■□□□□ 0.26
CDX1P47902 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.68■□□□□ 0.26
CDX1P47902 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX1P47902 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX1P47902 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CDX1P47902 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX1P47902 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms