Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.39■■□□□ 1.34
CLCN1P35523 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
CLCN1P35523 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CLCN1P35523 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CLCN1P35523 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CLCN1P35523 AL031602.1-201ENST00000633169 911 ntBASIC23.39■■□□□ 1.33
CLCN1P35523 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC23.39■■□□□ 1.33
CLCN1P35523 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CLCN1P35523 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC23.39■■□□□ 1.33
CLCN1P35523 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CLCN1P35523 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC23.38■■□□□ 1.33
CLCN1P35523 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
CLCN1P35523 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
CLCN1P35523 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
CLCN1P35523 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.38■■□□□ 1.33
CLCN1P35523 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
CLCN1P35523 AC131212.1-201ENST00000613771 668 ntBASIC23.38■■□□□ 1.33
CLCN1P35523 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.38■■□□□ 1.33
CLCN1P35523 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
CLCN1P35523 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.38■■□□□ 1.33
CLCN1P35523 AC006128.1-201ENST00000624704 1661 ntBASIC23.38■■□□□ 1.33
CLCN1P35523 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CLCN1P35523 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC23.38■■□□□ 1.33
CLCN1P35523 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CLCN1P35523 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CLCN1P35523 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.37■■□□□ 1.33
CLCN1P35523 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CLCN1P35523 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.37■■□□□ 1.33
CLCN1P35523 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CLCN1P35523 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.37■■□□□ 1.33
CLCN1P35523 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CLCN1P35523 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.37■■□□□ 1.33
CLCN1P35523 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
CLCN1P35523 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CLCN1P35523 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CLCN1P35523 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.36■■□□□ 1.33
CLCN1P35523 AL136116.3-201ENST00000402907 1138 ntBASIC23.36■■□□□ 1.33
CLCN1P35523 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.36■■□□□ 1.33
CLCN1P35523 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCN1P35523 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 SYT6-210ENST00000641643 1587 ntBASIC23.35■■□□□ 1.33
CLCN1P35523 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.35■■□□□ 1.33
CLCN1P35523 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC23.35■■□□□ 1.33
CLCN1P35523 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC23.35■■□□□ 1.33
CLCN1P35523 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.35■■□□□ 1.33
CLCN1P35523 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CLCN1P35523 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN1P35523 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN1P35523 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN1P35523 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN1P35523 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN1P35523 DUX4L19-201ENST00000557448 1267 ntBASIC23.34■■□□□ 1.33
CLCN1P35523 AL138724.1-201ENST00000606771 1088 ntBASIC23.34■■□□□ 1.33
CLCN1P35523 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN1P35523 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CLCN1P35523 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CLCN1P35523 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CLCN1P35523 AC005332.8-201ENST00000622750 2735 ntBASIC23.34■■□□□ 1.33
CLCN1P35523 AL162377.1-201ENST00000618844 1793 ntBASIC23.34■■□□□ 1.33
CLCN1P35523 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN1P35523 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN1P35523 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CLCN1P35523 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN1P35523 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CLCN1P35523 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN1P35523 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CLCN1P35523 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC23.33■■□□□ 1.33
CLCN1P35523 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN1P35523 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN1P35523 LTB4R2-202ENST00000528054 3092 ntBASIC23.33■■□□□ 1.33
CLCN1P35523 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC23.33■■□□□ 1.33
CLCN1P35523 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN1P35523 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC23.33■■□□□ 1.33
CLCN1P35523 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN1P35523 OR2I1P-207ENST00000453522 948 ntBASIC23.33■■□□□ 1.33
CLCN1P35523 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.33■■□□□ 1.33
CLCN1P35523 AC010525.1-201ENST00000585559 441 ntBASIC23.33■■□□□ 1.33
CLCN1P35523 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
CLCN1P35523 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.32
CLCN1P35523 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CLCN1P35523 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
CLCN1P35523 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.32■■□□□ 1.32
CLCN1P35523 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLCN1P35523 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms