Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.8■■□□□ 1.08
BDNFP23560 CLDN5-201ENST00000403084 2357 ntBASIC21.8■■□□□ 1.08
BDNFP23560 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.79■■□□□ 1.08
BDNFP23560 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
BDNFP23560 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 MCRIP2P1-201ENST00000394346 511 ntBASIC21.79■■□□□ 1.08
BDNFP23560 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 KRT18P6-201ENST00000555540 1265 ntBASIC21.79■■□□□ 1.08
BDNFP23560 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.79■■□□□ 1.08
BDNFP23560 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BDNFP23560 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
BDNFP23560 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
BDNFP23560 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BDNFP23560 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 LSM12P1-201ENST00000411836 588 ntBASIC21.78■■□□□ 1.08
BDNFP23560 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.78■■□□□ 1.08
BDNFP23560 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.78■■□□□ 1.08
BDNFP23560 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.78■■□□□ 1.08
BDNFP23560 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
BDNFP23560 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
BDNFP23560 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BDNFP23560 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BDNFP23560 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
BDNFP23560 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BDNFP23560 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.77■■□□□ 1.08
BDNFP23560 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BDNFP23560 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.77■■□□□ 1.08
BDNFP23560 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.77■■□□□ 1.08
BDNFP23560 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BDNFP23560 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.77■■□□□ 1.08
BDNFP23560 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.77■■□□□ 1.08
BDNFP23560 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
BDNFP23560 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BDNFP23560 CYP21A1P-202ENST00000354927 1481 ntBASIC21.77■■□□□ 1.07
BDNFP23560 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
BDNFP23560 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.76■■□□□ 1.07
BDNFP23560 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.76■■□□□ 1.07
BDNFP23560 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 DUSP5P2-201ENST00000426873 1033 ntBASIC21.76■■□□□ 1.07
BDNFP23560 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
BDNFP23560 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.76■■□□□ 1.07
BDNFP23560 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.76■■□□□ 1.07
BDNFP23560 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.76■■□□□ 1.07
BDNFP23560 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.76■■□□□ 1.07
BDNFP23560 CD99P1-205ENST00000527459 561 ntBASIC21.76■■□□□ 1.07
BDNFP23560 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.76■■□□□ 1.07
BDNFP23560 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
BDNFP23560 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
BDNFP23560 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.76■■□□□ 1.07
BDNFP23560 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 FEM1AP4-201ENST00000443167 1987 ntBASIC21.76■■□□□ 1.07
BDNFP23560 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BDNFP23560 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BDNFP23560 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BDNFP23560 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.75■■□□□ 1.07
BDNFP23560 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BDNFP23560 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
BDNFP23560 AC091874.3-201ENST00000512672 1195 ntBASIC21.75■■□□□ 1.07
BDNFP23560 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
BDNFP23560 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
BDNFP23560 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.75■■□□□ 1.07
BDNFP23560 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.75■■□□□ 1.07
BDNFP23560 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.74■■□□□ 1.07
BDNFP23560 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 AL049796.1-201ENST00000565336 1766 ntBASIC21.74■■□□□ 1.07
BDNFP23560 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.74■■□□□ 1.07
BDNFP23560 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms