Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.53■□□□□ 0.88
XRCC1P18887 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.53■□□□□ 0.88
XRCC1P18887 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.53■□□□□ 0.88
XRCC1P18887 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.53■□□□□ 0.88
XRCC1P18887 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.53■□□□□ 0.88
XRCC1P18887 AC010536.3-201ENST00000620306 533 ntBASIC20.53■□□□□ 0.88
XRCC1P18887 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
XRCC1P18887 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
XRCC1P18887 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.53■□□□□ 0.88
XRCC1P18887 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.53■□□□□ 0.88
XRCC1P18887 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
XRCC1P18887 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
XRCC1P18887 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.52■□□□□ 0.88
XRCC1P18887 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
XRCC1P18887 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
XRCC1P18887 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
XRCC1P18887 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
XRCC1P18887 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
XRCC1P18887 AC007322.1-201ENST00000426983 750 ntBASIC20.52■□□□□ 0.88
XRCC1P18887 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.52■□□□□ 0.88
XRCC1P18887 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.52■□□□□ 0.88
XRCC1P18887 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
XRCC1P18887 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
XRCC1P18887 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
XRCC1P18887 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
XRCC1P18887 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
XRCC1P18887 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
XRCC1P18887 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
XRCC1P18887 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
XRCC1P18887 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.51■□□□□ 0.87
XRCC1P18887 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.51■□□□□ 0.87
XRCC1P18887 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
XRCC1P18887 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
XRCC1P18887 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.51■□□□□ 0.87
XRCC1P18887 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.51■□□□□ 0.87
XRCC1P18887 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 AC006970.2-201ENST00000450065 779 ntBASIC20.5■□□□□ 0.87
XRCC1P18887 TERF1P5-201ENST00000477545 1207 ntBASIC20.5■□□□□ 0.87
XRCC1P18887 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.5■□□□□ 0.87
XRCC1P18887 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.5■□□□□ 0.87
XRCC1P18887 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.5■□□□□ 0.87
XRCC1P18887 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.5■□□□□ 0.87
XRCC1P18887 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 KRT16P2-201ENST00000414673 1423 ntBASIC20.5■□□□□ 0.87
XRCC1P18887 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.5■□□□□ 0.87
XRCC1P18887 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
XRCC1P18887 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
XRCC1P18887 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
XRCC1P18887 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.49■□□□□ 0.87
XRCC1P18887 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.49■□□□□ 0.87
XRCC1P18887 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.49■□□□□ 0.87
XRCC1P18887 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.49■□□□□ 0.87
XRCC1P18887 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.49■□□□□ 0.87
XRCC1P18887 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.49■□□□□ 0.87
XRCC1P18887 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.49■□□□□ 0.87
XRCC1P18887 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
XRCC1P18887 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
XRCC1P18887 NCF1B-203ENST00000435988 1254 ntBASIC20.48■□□□□ 0.87
XRCC1P18887 CNN2P6-201ENST00000439038 900 ntBASIC20.48■□□□□ 0.87
XRCC1P18887 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.48■□□□□ 0.87
XRCC1P18887 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.48■□□□□ 0.87
XRCC1P18887 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.48■□□□□ 0.87
XRCC1P18887 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
XRCC1P18887 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.48■□□□□ 0.87
XRCC1P18887 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
XRCC1P18887 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
XRCC1P18887 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
XRCC1P18887 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms