Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.85■□□□□ 0.93
RETP07949 KRT17P1-201ENST00000399211 1546 ntBASIC20.85■□□□□ 0.93
RETP07949 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETP07949 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.85■□□□□ 0.93
RETP07949 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
RETP07949 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.85■□□□□ 0.93
RETP07949 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RETP07949 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RETP07949 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETP07949 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RETP07949 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.85■□□□□ 0.93
RETP07949 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.85■□□□□ 0.93
RETP07949 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETP07949 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.84■□□□□ 0.93
RETP07949 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETP07949 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
RETP07949 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.84■□□□□ 0.93
RETP07949 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.84■□□□□ 0.93
RETP07949 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RETP07949 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETP07949 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETP07949 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RETP07949 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RETP07949 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.84■□□□□ 0.93
RETP07949 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.83■□□□□ 0.93
RETP07949 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.83■□□□□ 0.93
RETP07949 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RETP07949 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RETP07949 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
RETP07949 PNMA6B-201ENST00000538162 1200 ntBASIC20.83■□□□□ 0.93
RETP07949 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.92
RETP07949 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
RETP07949 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RETP07949 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RETP07949 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
RETP07949 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.82■□□□□ 0.92
RETP07949 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RETP07949 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.82■□□□□ 0.92
RETP07949 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.82■□□□□ 0.92
RETP07949 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RETP07949 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RETP07949 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RETP07949 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RETP07949 LINC01960-201ENST00000563759 1884 ntBASIC20.81■□□□□ 0.92
RETP07949 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 KRT17P2-201ENST00000300992 1314 ntBASIC20.81■□□□□ 0.92
RETP07949 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
RETP07949 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RETP07949 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 AL355472.2-201ENST00000422958 438 ntBASIC20.81■□□□□ 0.92
RETP07949 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.81■□□□□ 0.92
RETP07949 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.81■□□□□ 0.92
RETP07949 AC100791.3-201ENST00000617619 330 ntBASIC20.81■□□□□ 0.92
RETP07949 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RETP07949 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RETP07949 AC080038.3-201ENST00000623346 1952 ntBASIC20.81■□□□□ 0.92
RETP07949 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RETP07949 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.8■□□□□ 0.92
RETP07949 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
RETP07949 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.8■□□□□ 0.92
RETP07949 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.8■□□□□ 0.92
RETP07949 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.8■□□□□ 0.92
RETP07949 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RETP07949 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
RETP07949 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
RETP07949 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.79■□□□□ 0.92
RETP07949 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.79■□□□□ 0.92
RETP07949 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RETP07949 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 AC087742.1-201ENST00000575880 1738 ntBASIC20.79■□□□□ 0.92
RETP07949 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RETP07949 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms