Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TNFP01375 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFP01375 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFP01375 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFP01375 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TNFP01375 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFP01375 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 ITM2C-210ENST00000620962 501 ntBASIC20.2■□□□□ 0.82
TNFP01375 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TNFP01375 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TNFP01375 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFP01375 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFP01375 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFP01375 ESRRAP1-201ENST00000400596 1257 ntBASIC20.19■□□□□ 0.82
TNFP01375 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TNFP01375 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
TNFP01375 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFP01375 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TNFP01375 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.19■□□□□ 0.82
TNFP01375 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFP01375 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFP01375 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TNFP01375 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFP01375 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFP01375 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TNFP01375 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TNFP01375 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.18■□□□□ 0.82
TNFP01375 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFP01375 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.18■□□□□ 0.82
TNFP01375 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.18■□□□□ 0.82
TNFP01375 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.18■□□□□ 0.82
TNFP01375 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TNFP01375 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFP01375 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.18■□□□□ 0.82
TNFP01375 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.17■□□□□ 0.82
TNFP01375 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TNFP01375 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.17■□□□□ 0.82
TNFP01375 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFP01375 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFP01375 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFP01375 UNC93B5-201ENST00000530315 699 ntBASIC20.17■□□□□ 0.82
TNFP01375 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.17■□□□□ 0.82
TNFP01375 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 AC105020.6-201ENST00000621523 1217 ntBASIC20.17■□□□□ 0.82
TNFP01375 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.17■□□□□ 0.82
TNFP01375 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFP01375 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 AC133561.1-201ENST00000568600 2415 ntBASIC20.17■□□□□ 0.82
TNFP01375 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFP01375 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 PGM5P4-201ENST00000421970 445 ntBASIC20.16■□□□□ 0.82
TNFP01375 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.16■□□□□ 0.82
TNFP01375 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.16■□□□□ 0.82
TNFP01375 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.16■□□□□ 0.82
TNFP01375 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.16■□□□□ 0.82
TNFP01375 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.16■□□□□ 0.82
TNFP01375 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.16■□□□□ 0.82
TNFP01375 AC060766.5-201ENST00000590539 871 ntBASIC20.16■□□□□ 0.82
TNFP01375 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TNFP01375 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 HLA-B-256ENST00000639848 1089 ntBASIC20.16■□□□□ 0.82
TNFP01375 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFP01375 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFP01375 FBXW4P1-201ENST00000426721 2239 ntBASIC20.15■□□□□ 0.82
TNFP01375 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms