Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 AC116050.2-201ENST00000612102 1779 ntBASIC21.74■■□□□ 1.07
RTN3O95197 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTN3O95197 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RTN3O95197 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTN3O95197 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.73■■□□□ 1.07
RTN3O95197 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RTN3O95197 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.73■■□□□ 1.07
RTN3O95197 AC092118.2-201ENST00000613495 667 ntBASIC21.73■■□□□ 1.07
RTN3O95197 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.73■■□□□ 1.07
RTN3O95197 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RTN3O95197 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.73■■□□□ 1.07
RTN3O95197 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.73■■□□□ 1.07
RTN3O95197 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RTN3O95197 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
RTN3O95197 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.73■■□□□ 1.07
RTN3O95197 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
RTN3O95197 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.72■■□□□ 1.07
RTN3O95197 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.72■■□□□ 1.07
RTN3O95197 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.72■■□□□ 1.07
RTN3O95197 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.72■■□□□ 1.07
RTN3O95197 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.72■■□□□ 1.07
RTN3O95197 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RTN3O95197 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.72■■□□□ 1.07
RTN3O95197 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RTN3O95197 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.72■■□□□ 1.07
RTN3O95197 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RTN3O95197 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RTN3O95197 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.71■■□□□ 1.07
RTN3O95197 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.71■■□□□ 1.07
RTN3O95197 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.71■■□□□ 1.07
RTN3O95197 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.71■■□□□ 1.07
RTN3O95197 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.71■■□□□ 1.07
RTN3O95197 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RTN3O95197 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.7■■□□□ 1.07
RTN3O95197 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.7■■□□□ 1.06
RTN3O95197 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.7■■□□□ 1.06
RTN3O95197 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.7■■□□□ 1.06
RTN3O95197 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.7■■□□□ 1.06
RTN3O95197 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.7■■□□□ 1.06
RTN3O95197 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.7■■□□□ 1.06
RTN3O95197 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTN3O95197 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.69■■□□□ 1.06
RTN3O95197 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
RTN3O95197 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
RTN3O95197 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.69■■□□□ 1.06
RTN3O95197 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 MCRIP2P1-201ENST00000394346 511 ntBASIC21.69■■□□□ 1.06
RTN3O95197 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.69■■□□□ 1.06
RTN3O95197 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.69■■□□□ 1.06
RTN3O95197 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.69■■□□□ 1.06
RTN3O95197 AC098934.4-201ENST00000564127 592 ntBASIC21.69■■□□□ 1.06
RTN3O95197 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.69■■□□□ 1.06
RTN3O95197 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 Z98882.1-201ENST00000622160 2253 ntBASIC21.69■■□□□ 1.06
RTN3O95197 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RTN3O95197 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.69■■□□□ 1.06
RTN3O95197 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.69■■□□□ 1.06
RTN3O95197 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.69■■□□□ 1.06
RTN3O95197 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTN3O95197 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTN3O95197 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTN3O95197 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTN3O95197 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTN3O95197 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTN3O95197 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms