Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.24■■□□□ 1.31
MSH4O15457 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.24■■□□□ 1.31
MSH4O15457 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.24■■□□□ 1.31
MSH4O15457 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
MSH4O15457 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
MSH4O15457 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
MSH4O15457 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.23■■□□□ 1.31
MSH4O15457 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 AC121338.2-201ENST00000622535 1744 ntBASIC23.23■■□□□ 1.31
MSH4O15457 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
MSH4O15457 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
MSH4O15457 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.23■■□□□ 1.31
MSH4O15457 BX276092.2-201ENST00000417668 665 ntBASIC23.23■■□□□ 1.31
MSH4O15457 AC098934.4-201ENST00000564127 592 ntBASIC23.23■■□□□ 1.31
MSH4O15457 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.23■■□□□ 1.31
MSH4O15457 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.23■■□□□ 1.31
MSH4O15457 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
MSH4O15457 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
MSH4O15457 CYP21A1P-202ENST00000354927 1481 ntBASIC23.23■■□□□ 1.31
MSH4O15457 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH4O15457 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
MSH4O15457 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH4O15457 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
MSH4O15457 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
MSH4O15457 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.22■■□□□ 1.31
MSH4O15457 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.22■■□□□ 1.31
MSH4O15457 CYP2T3P-201ENST00000601990 817 ntBASIC23.22■■□□□ 1.31
MSH4O15457 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.22■■□□□ 1.31
MSH4O15457 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.22■■□□□ 1.31
MSH4O15457 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.22■■□□□ 1.31
MSH4O15457 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.22■■□□□ 1.31
MSH4O15457 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
MSH4O15457 PLK5-205ENST00000642079 1969 ntBASIC23.21■■□□□ 1.31
MSH4O15457 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
MSH4O15457 MCRIP2P1-201ENST00000394346 511 ntBASIC23.21■■□□□ 1.31
MSH4O15457 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
MSH4O15457 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.21■■□□□ 1.31
MSH4O15457 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.21■■□□□ 1.31
MSH4O15457 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 KRT17P1-201ENST00000399211 1546 ntBASIC23.21■■□□□ 1.31
MSH4O15457 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH4O15457 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH4O15457 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH4O15457 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.31
MSH4O15457 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH4O15457 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH4O15457 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH4O15457 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH4O15457 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH4O15457 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH4O15457 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH4O15457 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
MSH4O15457 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
MSH4O15457 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH4O15457 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms