Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC35.78■■■■□ 3.32
CUX2O14529 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 IPPK-202ENST00000375522 882 ntTSL 3 BASIC35.78■■■■□ 3.32
CUX2O14529 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC35.78■■■■□ 3.32
CUX2O14529 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC35.78■■■■□ 3.32
CUX2O14529 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC35.78■■■■□ 3.32
CUX2O14529 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CUX2O14529 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC35.78■■■■□ 3.32
CUX2O14529 NXN-202ENST00000537628 1340 ntTSL 3 BASIC35.78■■■■□ 3.32
CUX2O14529 PREB-202ENST00000406567 1910 ntTSL 5 BASIC35.77■■■■□ 3.32
CUX2O14529 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
CUX2O14529 NUDT16P1-203ENST00000513809 620 ntBASIC35.77■■■■□ 3.32
CUX2O14529 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
CUX2O14529 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
CUX2O14529 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
CUX2O14529 LINC00526-201ENST00000581067 1875 ntBASIC35.77■■■■□ 3.32
CUX2O14529 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC35.76■■■■□ 3.32
CUX2O14529 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
CUX2O14529 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC35.76■■■■□ 3.32
CUX2O14529 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC35.76■■■■□ 3.32
CUX2O14529 HES2-206ENST00000489730 730 ntTSL 2 BASIC35.76■■■■□ 3.32
CUX2O14529 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.31
CUX2O14529 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC35.76■■■■□ 3.31
CUX2O14529 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC35.75■■■■□ 3.31
CUX2O14529 CYP2D8P-201ENST00000433633 1490 ntBASIC35.75■■■■□ 3.31
CUX2O14529 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
CUX2O14529 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC35.75■■■■□ 3.31
CUX2O14529 AC120498.8-201ENST00000614275 531 ntBASIC35.75■■■■□ 3.31
CUX2O14529 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
CUX2O14529 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
CUX2O14529 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC35.74■■■■□ 3.31
CUX2O14529 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC35.74■■■■□ 3.31
CUX2O14529 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC35.74■■■■□ 3.31
CUX2O14529 GPALPP1-207ENST00000611650 899 ntBASIC35.74■■■■□ 3.31
CUX2O14529 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC35.74■■■■□ 3.31
CUX2O14529 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC35.74■■■■□ 3.31
CUX2O14529 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC35.74■■■■□ 3.31
CUX2O14529 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC35.74■■■■□ 3.31
CUX2O14529 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
CUX2O14529 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC35.73■■■■□ 3.31
CUX2O14529 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
CUX2O14529 TMA16-209ENST00000513272 803 ntTSL 2 BASIC35.73■■■■□ 3.31
CUX2O14529 REXO1L10P-201ENST00000615707 1290 ntBASIC35.73■■■■□ 3.31
CUX2O14529 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
CUX2O14529 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
CUX2O14529 MIR1238-201ENST00000408483 83 ntBASIC35.73■■■■□ 3.31
CUX2O14529 AL353807.1-201ENST00000427475 662 ntBASIC35.73■■■■□ 3.31
CUX2O14529 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC35.73■■■■□ 3.31
CUX2O14529 AC010203.1-204ENST00000548782 407 ntBASIC35.73■■■■□ 3.31
CUX2O14529 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC35.72■■■■□ 3.31
CUX2O14529 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC35.72■■■■□ 3.31
CUX2O14529 CDV3P1-201ENST00000471403 739 ntBASIC35.72■■■■□ 3.31
CUX2O14529 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC35.72■■■■□ 3.31
CUX2O14529 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
CUX2O14529 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC35.72■■■■□ 3.31
CUX2O14529 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC35.72■■■■□ 3.31
CUX2O14529 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC35.72■■■■□ 3.31
CUX2O14529 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
CUX2O14529 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC35.71■■■■□ 3.31
CUX2O14529 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
CUX2O14529 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC35.71■■■■□ 3.31
CUX2O14529 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
CUX2O14529 AC023511.2-201ENST00000618803 211 ntBASIC35.71■■■■□ 3.31
CUX2O14529 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
CUX2O14529 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC35.7■■■■□ 3.31
CUX2O14529 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC35.7■■■■□ 3.31
CUX2O14529 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC35.7■■■■□ 3.31
CUX2O14529 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC35.7■■■■□ 3.31
CUX2O14529 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
CUX2O14529 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC35.69■■■■□ 3.3
CUX2O14529 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC35.69■■■■□ 3.3
CUX2O14529 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC35.68■■■■□ 3.3
CUX2O14529 FAM197Y1-201ENST00000421178 764 ntBASIC35.68■■■■□ 3.3
CUX2O14529 AC006538.3-201ENST00000612495 578 ntBASIC35.68■■■■□ 3.3
CUX2O14529 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
CUX2O14529 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
CUX2O14529 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC35.68■■■■□ 3.3
CUX2O14529 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
CUX2O14529 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
CUX2O14529 COPS8-203ENST00000409334 794 ntTSL 5 BASIC35.67■■■■□ 3.3
CUX2O14529 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC35.67■■■■□ 3.3
CUX2O14529 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
CUX2O14529 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC35.67■■■■□ 3.3
CUX2O14529 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC35.67■■■■□ 3.3
CUX2O14529 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC35.67■■■■□ 3.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms