Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 AC092368.3-202ENST00000574180 1591 ntBASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
MBD3L4A6NDZ8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 AC098590.1-201ENST00000468126 897 ntBASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 AC008403.3-201ENST00000598924 454 ntBASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.2■□□□□ 0.5
MBD3L4A6NDZ8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.19■□□□□ 0.5
MBD3L4A6NDZ8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 GCSHP5-201ENST00000443090 522 ntBASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 UNC93B4-201ENST00000505679 747 ntBASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 C2orf69P4-201ENST00000565394 541 ntBASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MBD3L4A6NDZ8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 AC073648.6-201ENST00000641589 218 ntBASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MBD3L4A6NDZ8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MBD3L4A6NDZ8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms