Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 AC116050.2-201ENST00000612102 1779 ntBASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV40A0A0B4J280 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 AL117328.2-201ENST00000624617 1940 ntBASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 KRT18P29-201ENST00000397031 1267 ntBASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV40A0A0B4J280 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 CYP21A1P-202ENST00000354927 1481 ntBASIC16.79■□□□□ 0.28
TRAV40A0A0B4J280 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 ITM2C-210ENST00000620962 501 ntBASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms