Protein–RNA interactions for Protein: Q9Y3Q4

HCN4, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4, humanhuman

Predictions only

Length 1,203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN4Q9Y3Q4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HCN4Q9Y3Q4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 AL355355.2-201ENST00000442321 338 ntBASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
HCN4Q9Y3Q4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AC053503.5-201ENST00000601508 636 ntBASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 GPALPP1-207ENST00000611650 899 ntBASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AC008175.2-201ENST00000612840 297 ntBASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AL589743.5-201ENST00000616611 1050 ntBASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HCN4Q9Y3Q4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 AL355472.2-201ENST00000422958 438 ntBASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 MTDHP1-201ENST00000605323 784 ntBASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.22■□□□□ 0.99
HCN4Q9Y3Q4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 TERF1P1-201ENST00000311003 1181 ntBASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
HCN4Q9Y3Q4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HCN4Q9Y3Q4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms