Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
AP4E1Q9UPM8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 AC091799.1-201ENST00000422823 811 ntBASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
AP4E1Q9UPM8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 AC010536.3-201ENST00000620306 533 ntBASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
AP4E1Q9UPM8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 AC006015.1-201ENST00000429970 570 ntBASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 AC116050.2-201ENST00000612102 1779 ntBASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
AP4E1Q9UPM8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 MFSD11-216ENST00000590393 1141 ntBASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
AP4E1Q9UPM8 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 AC022517.1-201ENST00000592429 346 ntBASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
AP4E1Q9UPM8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms