Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4AQ9UN37 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4AQ9UN37 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4AQ9UN37 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4AQ9UN37 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4AQ9UN37 RNF165-205ENST00000588679 2904 ntBASIC19.92■□□□□ 0.78
VPS4AQ9UN37 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 TPRG1LP1-201ENST00000598702 760 ntBASIC19.92■□□□□ 0.78
VPS4AQ9UN37 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4AQ9UN37 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VPS4AQ9UN37 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4AQ9UN37 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
VPS4AQ9UN37 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4AQ9UN37 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms