Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 AC244015.2-201ENST00000616358 1861 ntBASIC18.8■□□□□ 0.6
DDX28Q9NUL7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DDX28Q9NUL7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 AL034346.1-201ENST00000568244 1277 ntBASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
DDX28Q9NUL7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 AC024257.2-201ENST00000549699 147 ntBASIC18.78■□□□□ 0.6
DDX28Q9NUL7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 AL136162.1-201ENST00000607711 1078 ntBASIC18.78■□□□□ 0.6
DDX28Q9NUL7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DDX28Q9NUL7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 AC135279.3-201ENST00000610945 1311 ntBASIC18.77■□□□□ 0.6
DDX28Q9NUL7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 PBX2P1-201ENST00000493219 1291 ntBASIC18.77■□□□□ 0.6
DDX28Q9NUL7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms