Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.66■□□□□ 0.9
TREX1Q9NSU2 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TREX1Q9NSU2 AC092667.1-201ENST00000434301 2586 ntBASIC20.66■□□□□ 0.9
TREX1Q9NSU2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TREX1Q9NSU2 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TREX1Q9NSU2 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 FP700111.2-201ENST00000619190 1892 ntBASIC20.65■□□□□ 0.9
TREX1Q9NSU2 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 NTF6G-201ENST00000591094 616 ntBASIC20.65■□□□□ 0.9
TREX1Q9NSU2 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 AC073130.3-201ENST00000624389 2278 ntBASIC20.65■□□□□ 0.9
TREX1Q9NSU2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TREX1Q9NSU2 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
TREX1Q9NSU2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.64■□□□□ 0.9
TREX1Q9NSU2 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.64■□□□□ 0.9
TREX1Q9NSU2 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TREX1Q9NSU2 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TREX1Q9NSU2 AC091799.1-201ENST00000422823 811 ntBASIC20.64■□□□□ 0.89
TREX1Q9NSU2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 UBE2DNL-204ENST00000602536 740 ntBASIC20.64■□□□□ 0.89
TREX1Q9NSU2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 AC116050.2-201ENST00000612102 1779 ntBASIC20.64■□□□□ 0.89
TREX1Q9NSU2 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.64■□□□□ 0.89
TREX1Q9NSU2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TREX1Q9NSU2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TREX1Q9NSU2 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms