Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CISHQ9NSE2 CDCA4P2-201ENST00000441182 718 ntBASIC22.07■■□□□ 1.12
CISHQ9NSE2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CISHQ9NSE2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CISHQ9NSE2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 AC007322.1-201ENST00000426983 750 ntBASIC22.06■■□□□ 1.12
CISHQ9NSE2 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.06■■□□□ 1.12
CISHQ9NSE2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 AC068338.2-201ENST00000563278 1430 ntBASIC22.06■■□□□ 1.12
CISHQ9NSE2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CISHQ9NSE2 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 AC007322.3-201ENST00000426526 701 ntBASIC22.05■■□□□ 1.12
CISHQ9NSE2 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 RAP2CP1-201ENST00000605103 478 ntBASIC22.05■■□□□ 1.12
CISHQ9NSE2 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.05■■□□□ 1.12
CISHQ9NSE2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CISHQ9NSE2 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 AC006128.1-201ENST00000624704 1661 ntBASIC22.04■■□□□ 1.12
CISHQ9NSE2 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 CDV3P1-201ENST00000471403 739 ntBASIC22.04■■□□□ 1.12
CISHQ9NSE2 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 AL162412.1-201ENST00000567129 965 ntBASIC22.04■■□□□ 1.12
CISHQ9NSE2 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CISHQ9NSE2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
CISHQ9NSE2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 AC016405.3-201ENST00000607710 860 ntBASIC22.03■■□□□ 1.12
CISHQ9NSE2 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CISHQ9NSE2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.03■■□□□ 1.12
CISHQ9NSE2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CISHQ9NSE2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms