Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AL158047.1-201ENST00000445918 881 ntBASIC24.56■■□□□ 1.52
DDX4Q9NQI0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
DDX4Q9NQI0 PNMA6B-201ENST00000538162 1200 ntBASIC24.56■■□□□ 1.52
DDX4Q9NQI0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC24.56■■□□□ 1.52
DDX4Q9NQI0 AC105020.6-201ENST00000621523 1217 ntBASIC24.56■■□□□ 1.52
DDX4Q9NQI0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC24.56■■□□□ 1.52
DDX4Q9NQI0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
DDX4Q9NQI0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 SLC29A4P2-201ENST00000504749 1089 ntBASIC24.55■■□□□ 1.52
DDX4Q9NQI0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 AC142381.4-202ENST00000563973 229 ntBASIC24.55■■□□□ 1.52
DDX4Q9NQI0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DDX4Q9NQI0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.54■■□□□ 1.52
DDX4Q9NQI0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.53■■□□□ 1.52
DDX4Q9NQI0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 AC092368.3-202ENST00000574180 1591 ntBASIC24.52■■□□□ 1.52
DDX4Q9NQI0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
DDX4Q9NQI0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.51■■□□□ 1.51
DDX4Q9NQI0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 UNC93B4-201ENST00000505679 747 ntBASIC24.51■■□□□ 1.51
DDX4Q9NQI0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.51■■□□□ 1.51
DDX4Q9NQI0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 AC233263.1-201ENST00000578059 224 ntBASIC24.5■■□□□ 1.51
DDX4Q9NQI0 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms