Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3AQ9NNX9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 LONRF2P2-201ENST00000439212 571 ntBASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCX3AQ9NNX9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 AC006128.1-201ENST00000624704 1661 ntBASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCX3AQ9NNX9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.27■□□□□ 0.68
VCX3AQ9NNX9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.67
VCX3AQ9NNX9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 AC004687.1-201ENST00000579003 1625 ntBASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCX3AQ9NNX9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms