Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.15■□□□□ 0.5
LIME1Q9H400 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.15■□□□□ 0.5
LIME1Q9H400 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.15■□□□□ 0.5
LIME1Q9H400 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.15■□□□□ 0.5
LIME1Q9H400 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.15■□□□□ 0.5
LIME1Q9H400 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LIME1Q9H400 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIME1Q9H400 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIME1Q9H400 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.14■□□□□ 0.5
LIME1Q9H400 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIME1Q9H400 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.14■□□□□ 0.49
LIME1Q9H400 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LIME1Q9H400 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.14■□□□□ 0.49
LIME1Q9H400 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.14■□□□□ 0.49
LIME1Q9H400 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.14■□□□□ 0.49
LIME1Q9H400 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.14■□□□□ 0.49
LIME1Q9H400 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.14■□□□□ 0.49
LIME1Q9H400 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 AC053503.5-201ENST00000601508 636 ntBASIC18.14■□□□□ 0.49
LIME1Q9H400 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.14■□□□□ 0.49
LIME1Q9H400 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
LIME1Q9H400 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIME1Q9H400 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
LIME1Q9H400 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.13■□□□□ 0.49
LIME1Q9H400 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.13■□□□□ 0.49
LIME1Q9H400 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.13■□□□□ 0.49
LIME1Q9H400 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LIME1Q9H400 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.13■□□□□ 0.49
LIME1Q9H400 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.13■□□□□ 0.49
LIME1Q9H400 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIME1Q9H400 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.13■□□□□ 0.49
LIME1Q9H400 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 AC244015.2-201ENST00000616358 1861 ntBASIC18.12■□□□□ 0.49
LIME1Q9H400 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.12■□□□□ 0.49
LIME1Q9H400 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.12■□□□□ 0.49
LIME1Q9H400 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.12■□□□□ 0.49
LIME1Q9H400 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.12■□□□□ 0.49
LIME1Q9H400 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.12■□□□□ 0.49
LIME1Q9H400 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.12■□□□□ 0.49
LIME1Q9H400 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.12■□□□□ 0.49
LIME1Q9H400 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.12■□□□□ 0.49
LIME1Q9H400 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 AC010980.2-201ENST00000587099 1412 ntBASIC18.12■□□□□ 0.49
LIME1Q9H400 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LIME1Q9H400 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.12■□□□□ 0.49
LIME1Q9H400 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIME1Q9H400 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
LIME1Q9H400 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.11■□□□□ 0.49
LIME1Q9H400 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms