Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS11Q9H270 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS11Q9H270 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS11Q9H270 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS11Q9H270 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS11Q9H270 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.76■□□□□ 0.91
VPS11Q9H270 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS11Q9H270 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS11Q9H270 AC131212.1-201ENST00000613771 668 ntBASIC20.76■□□□□ 0.91
VPS11Q9H270 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS11Q9H270 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS11Q9H270 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
VPS11Q9H270 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS11Q9H270 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS11Q9H270 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS11Q9H270 AC099791.1-201ENST00000416440 715 ntBASIC20.75■□□□□ 0.91
VPS11Q9H270 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS11Q9H270 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.75■□□□□ 0.91
VPS11Q9H270 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS11Q9H270 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
VPS11Q9H270 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS11Q9H270 AC007225.1-201ENST00000566331 1836 ntBASIC20.75■□□□□ 0.91
VPS11Q9H270 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS11Q9H270 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 TSPY26P-201ENST00000476365 1326 ntBASIC20.75■□□□□ 0.91
VPS11Q9H270 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS11Q9H270 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS11Q9H270 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS11Q9H270 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS11Q9H270 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS11Q9H270 AC005224.4-201ENST00000583262 1652 ntBASIC20.74■□□□□ 0.91
VPS11Q9H270 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS11Q9H270 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS11Q9H270 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS11Q9H270 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
VPS11Q9H270 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS11Q9H270 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS11Q9H270 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS11Q9H270 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS11Q9H270 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS11Q9H270 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS11Q9H270 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS11Q9H270 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS11Q9H270 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS11Q9H270 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS11Q9H270 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS11Q9H270 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS11Q9H270 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS11Q9H270 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VPS11Q9H270 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.73■□□□□ 0.91
VPS11Q9H270 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
VPS11Q9H270 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
VPS11Q9H270 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS11Q9H270 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS11Q9H270 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
VPS11Q9H270 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS11Q9H270 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS11Q9H270 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
VPS11Q9H270 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS11Q9H270 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS11Q9H270 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VPS11Q9H270 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS11Q9H270 PCDHAC2-203ENST00000615316 3011 ntBASIC20.72■□□□□ 0.91
VPS11Q9H270 AL162377.1-201ENST00000618844 1793 ntBASIC20.72■□□□□ 0.91
VPS11Q9H270 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
VPS11Q9H270 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS11Q9H270 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS11Q9H270 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
VPS11Q9H270 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.71■□□□□ 0.91
VPS11Q9H270 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS11Q9H270 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms