Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 AC027702.1-201ENST00000563810 1770 ntBASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 KRT18P11-201ENST00000435214 1283 ntBASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CCSER1Q9C0I3 AL157384.1-201ENST00000445995 2473 ntBASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCSER1Q9C0I3 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.15■■□□□ 1.3
CCSER1Q9C0I3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC137761.2-201ENST00000561729 223 ntBASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC145350.3-201ENST00000569033 163 ntBASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 AC010536.3-201ENST00000620306 533 ntBASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.14■■□□□ 1.29
CCSER1Q9C0I3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 TERF1P5-201ENST00000477545 1207 ntBASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.13■■□□□ 1.29
CCSER1Q9C0I3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 AP005212.1-201ENST00000581547 1997 ntBASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 AC007322.3-201ENST00000426526 701 ntBASIC23.12■■□□□ 1.29
CCSER1Q9C0I3 AC006015.1-201ENST00000429970 570 ntBASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms