Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRCH3Q96II8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 AC004812.2-201ENST00000611079 2094 ntBASIC22.51■■□□□ 1.19
LRCH3Q96II8 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 AL355355.2-201ENST00000442321 338 ntBASIC22.51■■□□□ 1.19
LRCH3Q96II8 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
LRCH3Q96II8 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
LRCH3Q96II8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 KRT18P56-201ENST00000507275 550 ntBASIC22.5■■□□□ 1.19
LRCH3Q96II8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 WWOX-216ENST00000569818 525 ntBASIC22.5■■□□□ 1.19
LRCH3Q96II8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
LRCH3Q96II8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LRCH3Q96II8 AC068473.5-201ENST00000616428 2072 ntBASIC22.5■■□□□ 1.19
LRCH3Q96II8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 MCRIP2P1-201ENST00000394346 511 ntBASIC22.49■■□□□ 1.19
LRCH3Q96II8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 AL137013.1-201ENST00000432946 1228 ntBASIC22.49■■□□□ 1.19
LRCH3Q96II8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.49■■□□□ 1.19
LRCH3Q96II8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRCH3Q96II8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.48■■□□□ 1.19
LRCH3Q96II8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRCH3Q96II8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.48■■□□□ 1.19
LRCH3Q96II8 AC073508.3-201ENST00000619697 1419 ntBASIC22.48■■□□□ 1.19
LRCH3Q96II8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 LINC01568-207ENST00000641790 1380 ntBASIC22.47■■□□□ 1.19
LRCH3Q96II8 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
LRCH3Q96II8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LRCH3Q96II8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms