Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.71■□□□□ 0.75
VMP1Q96GC9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VMP1Q96GC9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 AC004911.1-201ENST00000416316 871 ntBASIC19.7■□□□□ 0.74
VMP1Q96GC9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VMP1Q96GC9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.7■□□□□ 0.74
VMP1Q96GC9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.69■□□□□ 0.74
VMP1Q96GC9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
VMP1Q96GC9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VMP1Q96GC9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VMP1Q96GC9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VMP1Q96GC9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VMP1Q96GC9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VMP1Q96GC9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
VMP1Q96GC9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.68■□□□□ 0.74
VMP1Q96GC9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 KRT18P20-201ENST00000548986 1279 ntBASIC19.67■□□□□ 0.74
VMP1Q96GC9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VMP1Q96GC9 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VMP1Q96GC9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VMP1Q96GC9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms