Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 AC231657.2-201ENST00000624556 255 ntBASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 CDV3P1-201ENST00000471403 739 ntBASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 AC068338.2-201ENST00000563278 1430 ntBASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 FAM21FP-204ENST00000608637 956 ntBASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 AC027702.1-201ENST00000563810 1770 ntBASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
CTHRC1Q96CG8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 AC004911.1-201ENST00000416316 871 ntBASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.2■□□□□ 0.66
CTHRC1Q96CG8 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 AC080038.1-201ENST00000611274 1154 ntBASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.19■□□□□ 0.66
CTHRC1Q96CG8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 AC073111.5-205ENST00000641717 521 ntBASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.18■□□□□ 0.66
CTHRC1Q96CG8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms