Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB4Q8WW32 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 AC233263.1-201ENST00000578059 224 ntBASIC20.78■□□□□ 0.92
HMGB4Q8WW32 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB4Q8WW32 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.77■□□□□ 0.92
HMGB4Q8WW32 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
HMGB4Q8WW32 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.91
HMGB4Q8WW32 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
HMGB4Q8WW32 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.76■□□□□ 0.91
HMGB4Q8WW32 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 AC105020.6-201ENST00000621523 1217 ntBASIC20.76■□□□□ 0.91
HMGB4Q8WW32 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB4Q8WW32 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 MIR718-201ENST00000390190 70 ntBASIC20.75■□□□□ 0.91
HMGB4Q8WW32 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms