Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 OR10C1-204ENST00000622521 1039 ntBASIC6.34□□□□□ -1.39
SYNE1Q8NF91 AC133041.1-202ENST00000642053 222 ntBASIC6.34□□□□□ -1.39
SYNE1Q8NF91 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 RHOD-202ENST00000532559 538 ntTSL 3 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC6.34□□□□□ -1.39
SYNE1Q8NF91 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 FAM201B-201ENST00000458407 597 ntBASIC6.34□□□□□ -1.4
SYNE1Q8NF91 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 ISCU-212ENST00000547005 795 ntTSL 3 BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 AC080038.3-201ENST00000623346 1952 ntBASIC6.34□□□□□ -1.4
SYNE1Q8NF91 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC6.34□□□□□ -1.4
SYNE1Q8NF91 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 UNC93B5-201ENST00000530315 699 ntBASIC6.33□□□□□ -1.4
SYNE1Q8NF91 AC079089.2-201ENST00000531211 1277 ntBASIC6.33□□□□□ -1.4
SYNE1Q8NF91 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 AC006058.3-201ENST00000606217 1069 ntBASIC6.33□□□□□ -1.4
SYNE1Q8NF91 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 RARG-204ENST00000543726 1779 ntTSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ARL16-209ENST00000573715 763 ntTSL 3 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 ARL16-211ENST00000576135 694 ntTSL 3 BASIC6.33□□□□□ -1.4
SYNE1Q8NF91 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms