Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 AC099791.2-201ENST00000605725 427 ntBASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF540Q8NDQ6 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 AC027702.1-201ENST00000563810 1770 ntBASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 MIR939-201ENST00000401314 82 ntBASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 AF213884.3-201ENST00000563833 479 ntBASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF540Q8NDQ6 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 SERBP1P1-201ENST00000396021 1160 ntBASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.05■□□□□ 0.64
ZNF540Q8NDQ6 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 AC003102.1-202ENST00000563394 1796 ntBASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 AC027682.1-201ENST00000562846 899 ntBASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 MIR4767-201ENST00000582827 78 ntBASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 RASA4CP-201ENST00000424092 1398 ntBASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
ZNF540Q8NDQ6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 AC112907.3-201ENST00000577781 2400 ntBASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 AC105265.2-201ENST00000467189 838 ntBASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 AP001330.3-201ENST00000520123 633 ntBASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 RARRES2P6-201ENST00000567333 442 ntBASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 AC020907.5-201ENST00000624372 1936 ntBASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF540Q8NDQ6 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms