Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.23■□□□□ 0.99
RTL3Q8N8U3 AC007322.3-201ENST00000426526 701 ntBASIC21.23■□□□□ 0.99
RTL3Q8N8U3 AC026185.1-201ENST00000445748 174 ntBASIC21.23■□□□□ 0.99
RTL3Q8N8U3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RTL3Q8N8U3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTL3Q8N8U3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 AC005181.1-201ENST00000604782 1256 ntBASIC21.21■□□□□ 0.99
RTL3Q8N8U3 AC016405.3-201ENST00000607710 860 ntBASIC21.21■□□□□ 0.99
RTL3Q8N8U3 FAM21FP-204ENST00000608637 956 ntBASIC21.21■□□□□ 0.99
RTL3Q8N8U3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 PLK5-205ENST00000642079 1969 ntBASIC21.21■□□□□ 0.99
RTL3Q8N8U3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RTL3Q8N8U3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 CYP2T1P-201ENST00000432607 1285 ntBASIC21.2■□□□□ 0.98
RTL3Q8N8U3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
RTL3Q8N8U3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RTL3Q8N8U3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 CROCCP5-201ENST00000436658 830 ntBASIC21.18■□□□□ 0.98
RTL3Q8N8U3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RTL3Q8N8U3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms