Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 OR2I1P-207ENST00000453522 948 ntBASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 AC010141.3-201ENST00000456659 717 ntBASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
DEPDC4Q8N2C3 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
DEPDC4Q8N2C3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 MIR5787-201ENST00000611784 55 ntBASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 TSPY26P-201ENST00000476365 1326 ntBASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.14■□□□□ 0.65
DEPDC4Q8N2C3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
DEPDC4Q8N2C3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 IGHV3-19-201ENST00000521488 291 ntBASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 PLK5-205ENST00000642079 1969 ntBASIC19.12■□□□□ 0.65
DEPDC4Q8N2C3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
DEPDC4Q8N2C3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms