Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.77■□□□□ 0.6
ATG4DQ86TL0 AL157384.1-201ENST00000445995 2473 ntBASIC18.77■□□□□ 0.59
ATG4DQ86TL0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
ATG4DQ86TL0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
ATG4DQ86TL0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 FEM1AP1-201ENST00000431297 1995 ntBASIC18.76■□□□□ 0.59
ATG4DQ86TL0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATG4DQ86TL0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 AC243732.1-201ENST00000612648 864 ntBASIC18.75■□□□□ 0.59
ATG4DQ86TL0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4DQ86TL0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 UBE2DNL-204ENST00000602536 740 ntBASIC18.74■□□□□ 0.59
ATG4DQ86TL0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 AC007225.1-201ENST00000566331 1836 ntBASIC18.74■□□□□ 0.59
ATG4DQ86TL0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4DQ86TL0 RBM17P2-201ENST00000616397 1405 ntBASIC18.74■□□□□ 0.59
ATG4DQ86TL0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4DQ86TL0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms