Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 PCDHAC2-203ENST00000615316 3011 ntBASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 AC073314.1-201ENST00000568729 2216 ntBASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMARCD3Q6STE5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 AL391422.3-201ENST00000603791 2761 ntBASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.81■□□□□ 0.6
SMARCD3Q6STE5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 MIR939-201ENST00000401314 82 ntBASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCD3Q6STE5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 AC091305.1-201ENST00000479476 895 ntBASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 AF213884.3-201ENST00000563833 479 ntBASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCD3Q6STE5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 EEF1DP3-203ENST00000566025 782 ntBASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 AC053503.5-201ENST00000601508 636 ntBASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCD3Q6STE5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 AC007225.1-201ENST00000566331 1836 ntBASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 AC012414.1-201ENST00000556676 535 ntBASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCD3Q6STE5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms