Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRIF1Q5T3J3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRIF1Q5T3J3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRIF1Q5T3J3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
LRIF1Q5T3J3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.51■□□□□ 0.71
LRIF1Q5T3J3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 MIR939-201ENST00000401314 82 ntBASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 TPRG1LP1-201ENST00000598702 760 ntBASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 AL391422.3-201ENST00000603791 2761 ntBASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LRIF1Q5T3J3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LRIF1Q5T3J3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 AL355001.2-201ENST00000620617 1191 ntBASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LRIF1Q5T3J3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 AC091305.1-201ENST00000479476 895 ntBASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 AC131212.1-201ENST00000613771 668 ntBASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 AC099778.1-201ENST00000568593 1911 ntBASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LRIF1Q5T3J3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 POU5F1P4-201ENST00000413175 1085 ntBASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 AF213884.3-201ENST00000563833 479 ntBASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRIF1Q5T3J3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms