Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC13.01□□□□□ -0.33
HSPG2P98160 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.01□□□□□ -0.33
HSPG2P98160 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC13.01□□□□□ -0.33
HSPG2P98160 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC13□□□□□ -0.33
HSPG2P98160 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13□□□□□ -0.33
HSPG2P98160 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
HSPG2P98160 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC13□□□□□ -0.33
HSPG2P98160 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 WWOX-216ENST00000569818 525 ntBASIC13□□□□□ -0.33
HSPG2P98160 CABP2-204ENST00000636477 941 ntTSL 5 BASIC13□□□□□ -0.33
HSPG2P98160 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
HSPG2P98160 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 KRT18P68-201ENST00000392293 1000 ntBASIC13□□□□□ -0.33
HSPG2P98160 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13□□□□□ -0.33
HSPG2P98160 KRT18P48-201ENST00000434763 852 ntBASIC13□□□□□ -0.33
HSPG2P98160 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13□□□□□ -0.33
HSPG2P98160 AC120498.8-201ENST00000614275 531 ntBASIC13□□□□□ -0.33
HSPG2P98160 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC13□□□□□ -0.33
HSPG2P98160 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC12.99□□□□□ -0.33
HSPG2P98160 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC12.99□□□□□ -0.33
HSPG2P98160 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12.99□□□□□ -0.33
HSPG2P98160 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC12.99□□□□□ -0.33
HSPG2P98160 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HSPG2P98160 FAM197Y1-201ENST00000421178 764 ntBASIC12.99□□□□□ -0.33
HSPG2P98160 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.99□□□□□ -0.33
HSPG2P98160 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HSPG2P98160 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC12.99□□□□□ -0.33
HSPG2P98160 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC12.99□□□□□ -0.33
HSPG2P98160 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
HSPG2P98160 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HSPG2P98160 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC12.98□□□□□ -0.33
HSPG2P98160 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 NUDT16P1-203ENST00000513809 620 ntBASIC12.98□□□□□ -0.33
HSPG2P98160 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC12.98□□□□□ -0.33
HSPG2P98160 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HSPG2P98160 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC12.98□□□□□ -0.33
HSPG2P98160 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HSPG2P98160 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.98□□□□□ -0.33
HSPG2P98160 EED-207ENST00000528180 1745 ntTSL 5 BASIC12.98□□□□□ -0.33
HSPG2P98160 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HSPG2P98160 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 AC005829.2-201ENST00000571422 1056 ntBASIC12.97□□□□□ -0.33
HSPG2P98160 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC12.97□□□□□ -0.33
HSPG2P98160 LINC01568-207ENST00000641790 1380 ntBASIC12.97□□□□□ -0.33
HSPG2P98160 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC12.97□□□□□ -0.33
HSPG2P98160 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 BX664615.1-201ENST00000443558 458 ntBASIC12.97□□□□□ -0.33
HSPG2P98160 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC12.97□□□□□ -0.33
HSPG2P98160 SERP1-205ENST00000487153 657 ntTSL 4 BASIC12.97□□□□□ -0.33
HSPG2P98160 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HSPG2P98160 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.97□□□□□ -0.33
HSPG2P98160 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HSPG2P98160 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC12.97□□□□□ -0.33
HSPG2P98160 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
HSPG2P98160 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC12.97□□□□□ -0.33
HSPG2P98160 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms