Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.74■□□□□ 0.43
AP3S2P59780 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.74■□□□□ 0.43
AP3S2P59780 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
AP3S2P59780 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.74■□□□□ 0.43
AP3S2P59780 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.74■□□□□ 0.43
AP3S2P59780 ABHD17AP3-201ENST00000503096 1137 ntBASIC17.74■□□□□ 0.43
AP3S2P59780 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
AP3S2P59780 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
AP3S2P59780 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP3S2P59780 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
AP3S2P59780 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.74■□□□□ 0.43
AP3S2P59780 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.73■□□□□ 0.43
AP3S2P59780 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
AP3S2P59780 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.73■□□□□ 0.43
AP3S2P59780 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.73■□□□□ 0.43
AP3S2P59780 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.73■□□□□ 0.43
AP3S2P59780 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.73■□□□□ 0.43
AP3S2P59780 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.73■□□□□ 0.43
AP3S2P59780 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
AP3S2P59780 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP3S2P59780 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
AP3S2P59780 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.72■□□□□ 0.43
AP3S2P59780 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
AP3S2P59780 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.72■□□□□ 0.43
AP3S2P59780 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC17.72■□□□□ 0.43
AP3S2P59780 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC17.72■□□□□ 0.43
AP3S2P59780 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.72■□□□□ 0.43
AP3S2P59780 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP3S2P59780 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.71■□□□□ 0.43
AP3S2P59780 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.71■□□□□ 0.43
AP3S2P59780 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
AP3S2P59780 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
AP3S2P59780 PVT1_1.1-201ENST00000615125 194 ntBASIC17.71■□□□□ 0.43
AP3S2P59780 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
AP3S2P59780 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
AP3S2P59780 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
AP3S2P59780 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.71■□□□□ 0.43
AP3S2P59780 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
AP3S2P59780 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
AP3S2P59780 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
AP3S2P59780 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
AP3S2P59780 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
AP3S2P59780 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
AP3S2P59780 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.7■□□□□ 0.42
AP3S2P59780 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
AP3S2P59780 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms