Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 AL512408.1-201ENST00000569378 2000 ntBASIC16.89■□□□□ 0.29
NKX2-1P43699 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.89■□□□□ 0.29
NKX2-1P43699 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 AC239859.2-201ENST00000444165 318 ntBASIC16.89■□□□□ 0.29
NKX2-1P43699 AC099791.2-201ENST00000605725 427 ntBASIC16.89■□□□□ 0.29
NKX2-1P43699 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 AL162377.1-201ENST00000618844 1793 ntBASIC16.89■□□□□ 0.29
NKX2-1P43699 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
NKX2-1P43699 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NKX2-1P43699 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NKX2-1P43699 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.88■□□□□ 0.29
NKX2-1P43699 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
NKX2-1P43699 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX2-1P43699 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
NKX2-1P43699 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX2-1P43699 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 MIR3181-201ENST00000578512 73 ntBASIC16.88■□□□□ 0.29
NKX2-1P43699 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX2-1P43699 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
NKX2-1P43699 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC16.88■□□□□ 0.29
NKX2-1P43699 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.87■□□□□ 0.29
NKX2-1P43699 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 FP700111.2-201ENST00000619190 1892 ntBASIC16.87■□□□□ 0.29
NKX2-1P43699 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.87■□□□□ 0.29
NKX2-1P43699 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
NKX2-1P43699 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.87■□□□□ 0.29
NKX2-1P43699 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.87■□□□□ 0.29
NKX2-1P43699 MIR6724-1-201ENST00000616420 92 ntBASIC16.87■□□□□ 0.29
NKX2-1P43699 MIR6724-2-201ENST00000616483 92 ntBASIC16.87■□□□□ 0.29
NKX2-1P43699 MIR6724-4-201ENST00000617390 92 ntBASIC16.87■□□□□ 0.29
NKX2-1P43699 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.87■□□□□ 0.29
NKX2-1P43699 MIR6724-3-201ENST00000622482 92 ntBASIC16.87■□□□□ 0.29
NKX2-1P43699 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.87■□□□□ 0.29
NKX2-1P43699 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
NKX2-1P43699 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
NKX2-1P43699 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.86■□□□□ 0.29
NKX2-1P43699 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.86■□□□□ 0.29
NKX2-1P43699 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.86■□□□□ 0.29
NKX2-1P43699 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
NKX2-1P43699 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.86■□□□□ 0.29
NKX2-1P43699 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.86■□□□□ 0.29
NKX2-1P43699 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
NKX2-1P43699 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
NKX2-1P43699 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX2-1P43699 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
NKX2-1P43699 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
NKX2-1P43699 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms