Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.65■□□□□ 0.74
RORAP35398 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.65■□□□□ 0.74
RORAP35398 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RORAP35398 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.65■□□□□ 0.74
RORAP35398 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RORAP35398 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
RORAP35398 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RORAP35398 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
RORAP35398 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
RORAP35398 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RORAP35398 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RORAP35398 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.65■□□□□ 0.74
RORAP35398 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.65■□□□□ 0.74
RORAP35398 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
RORAP35398 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
RORAP35398 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RORAP35398 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.64■□□□□ 0.73
RORAP35398 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.64■□□□□ 0.73
RORAP35398 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.64■□□□□ 0.73
RORAP35398 AC091874.3-201ENST00000512672 1195 ntBASIC19.64■□□□□ 0.73
RORAP35398 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.64■□□□□ 0.73
RORAP35398 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.64■□□□□ 0.73
RORAP35398 AC100791.3-201ENST00000617619 330 ntBASIC19.64■□□□□ 0.73
RORAP35398 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.64■□□□□ 0.73
RORAP35398 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
RORAP35398 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RORAP35398 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RORAP35398 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.64■□□□□ 0.73
RORAP35398 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RORAP35398 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RORAP35398 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RORAP35398 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RORAP35398 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.63■□□□□ 0.73
RORAP35398 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.63■□□□□ 0.73
RORAP35398 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 AC097658.1-201ENST00000475555 843 ntBASIC19.63■□□□□ 0.73
RORAP35398 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.63■□□□□ 0.73
RORAP35398 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.63■□□□□ 0.73
RORAP35398 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.63■□□□□ 0.73
RORAP35398 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.63■□□□□ 0.73
RORAP35398 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RORAP35398 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RORAP35398 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.62■□□□□ 0.73
RORAP35398 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
RORAP35398 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
RORAP35398 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.62■□□□□ 0.73
RORAP35398 LINC00565-201ENST00000562710 2331 ntBASIC19.62■□□□□ 0.73
RORAP35398 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RORAP35398 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RORAP35398 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.62■□□□□ 0.73
RORAP35398 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 DUSP5P2-201ENST00000426873 1033 ntBASIC19.62■□□□□ 0.73
RORAP35398 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.62■□□□□ 0.73
RORAP35398 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.62■□□□□ 0.73
RORAP35398 RNA5SP413-201ENST00000516373 109 ntBASIC19.62■□□□□ 0.73
RORAP35398 AC244015.2-201ENST00000616358 1861 ntBASIC19.62■□□□□ 0.73
RORAP35398 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RORAP35398 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RORAP35398 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RORAP35398 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.61■□□□□ 0.73
RORAP35398 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.61■□□□□ 0.73
RORAP35398 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RORAP35398 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms