Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHC1P29353 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHC1P29353 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.92■□□□□ 0.62
SHC1P29353 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.92■□□□□ 0.62
SHC1P29353 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHC1P29353 AC092666.2-201ENST00000613287 246 ntBASIC18.92■□□□□ 0.62
SHC1P29353 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHC1P29353 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SHC1P29353 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHC1P29353 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.92■□□□□ 0.62
SHC1P29353 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.91■□□□□ 0.62
SHC1P29353 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SHC1P29353 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.91■□□□□ 0.62
SHC1P29353 AC006015.1-201ENST00000429970 570 ntBASIC18.91■□□□□ 0.62
SHC1P29353 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.91■□□□□ 0.62
SHC1P29353 AC008175.2-201ENST00000612840 297 ntBASIC18.91■□□□□ 0.62
SHC1P29353 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHC1P29353 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.91■□□□□ 0.62
SHC1P29353 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.91■□□□□ 0.62
SHC1P29353 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SHC1P29353 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 AC016769.1-201ENST00000409132 1010 ntBASIC18.9■□□□□ 0.62
SHC1P29353 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.9■□□□□ 0.62
SHC1P29353 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.9■□□□□ 0.62
SHC1P29353 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.9■□□□□ 0.62
SHC1P29353 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.9■□□□□ 0.62
SHC1P29353 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SHC1P29353 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
SHC1P29353 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHC1P29353 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SHC1P29353 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHC1P29353 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SHC1P29353 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.89■□□□□ 0.61
SHC1P29353 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.89■□□□□ 0.61
SHC1P29353 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.89■□□□□ 0.61
SHC1P29353 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
SHC1P29353 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHC1P29353 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.88■□□□□ 0.61
SHC1P29353 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHC1P29353 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 POU5F1P4-201ENST00000413175 1085 ntBASIC18.88■□□□□ 0.61
SHC1P29353 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.88■□□□□ 0.61
SHC1P29353 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.88■□□□□ 0.61
SHC1P29353 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.88■□□□□ 0.61
SHC1P29353 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.88■□□□□ 0.61
SHC1P29353 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.88■□□□□ 0.61
SHC1P29353 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.88■□□□□ 0.61
SHC1P29353 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHC1P29353 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SHC1P29353 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHC1P29353 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.87■□□□□ 0.61
SHC1P29353 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 AC004911.1-201ENST00000416316 871 ntBASIC18.87■□□□□ 0.61
SHC1P29353 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.87■□□□□ 0.61
SHC1P29353 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.87■□□□□ 0.61
SHC1P29353 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.87■□□□□ 0.61
SHC1P29353 AC011767.1-201ENST00000617410 1153 ntBASIC18.87■□□□□ 0.61
SHC1P29353 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.87■□□□□ 0.61
SHC1P29353 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 MYCNOS-205ENST00000641950 531 ntBASIC18.87■□□□□ 0.61
SHC1P29353 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHC1P29353 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms