Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 ECEL1P3-201ENST00000427961 737 ntBASIC20.03■□□□□ 0.8
COL5A1P20908 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 Z99916.2-201ENST00000604037 246 ntBASIC20.03■□□□□ 0.8
COL5A1P20908 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A1P20908 ECEL1P1-201ENST00000373592 1742 ntBASIC20.03■□□□□ 0.8
COL5A1P20908 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.02■□□□□ 0.8
COL5A1P20908 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.02■□□□□ 0.8
COL5A1P20908 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.02■□□□□ 0.8
COL5A1P20908 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.02■□□□□ 0.8
COL5A1P20908 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.02■□□□□ 0.8
COL5A1P20908 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL5A1P20908 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A1P20908 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A1P20908 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
COL5A1P20908 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A1P20908 AC133681.1-201ENST00000465482 601 ntBASIC20.02■□□□□ 0.79
COL5A1P20908 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.02■□□□□ 0.79
COL5A1P20908 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL5A1P20908 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 FAM99A-202ENST00000538190 1989 ntBASIC20.01■□□□□ 0.79
COL5A1P20908 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A1P20908 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A1P20908 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL5A1P20908 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.01■□□□□ 0.79
COL5A1P20908 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL5A1P20908 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.01■□□□□ 0.79
COL5A1P20908 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A1P20908 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL5A1P20908 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.01■□□□□ 0.79
COL5A1P20908 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL5A1P20908 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A1P20908 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A1P20908 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL5A1P20908 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20■□□□□ 0.79
COL5A1P20908 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL5A1P20908 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
COL5A1P20908 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.99■□□□□ 0.79
COL5A1P20908 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL5A1P20908 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.99■□□□□ 0.79
COL5A1P20908 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.99■□□□□ 0.79
COL5A1P20908 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.99■□□□□ 0.79
COL5A1P20908 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 AC233702.5-201ENST00000584107 538 ntBASIC19.99■□□□□ 0.79
COL5A1P20908 AC124016.1-201ENST00000609552 612 ntBASIC19.99■□□□□ 0.79
COL5A1P20908 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.99■□□□□ 0.79
COL5A1P20908 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL5A1P20908 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL5A1P20908 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A1P20908 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.98■□□□□ 0.79
COL5A1P20908 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A1P20908 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL5A1P20908 RPS2P55-201ENST00000397318 883 ntBASIC19.98■□□□□ 0.79
COL5A1P20908 AC107956.1-201ENST00000494359 873 ntBASIC19.98■□□□□ 0.79
COL5A1P20908 BX088651.1-201ENST00000540551 451 ntBASIC19.98■□□□□ 0.79
COL5A1P20908 AC026471.6-201ENST00000622954 1905 ntBASIC19.98■□□□□ 0.79
COL5A1P20908 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A1P20908 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.98■□□□□ 0.79
COL5A1P20908 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A1P20908 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL5A1P20908 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL5A1P20908 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL5A1P20908 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.97■□□□□ 0.79
COL5A1P20908 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.97■□□□□ 0.79
COL5A1P20908 MTDHP1-201ENST00000605323 784 ntBASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms