Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCA1O95477 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCA1O95477 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.3■□□□□ 0.36
ABCA1O95477 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ABCA1O95477 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ABCA1O95477 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA1O95477 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA1O95477 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ABCA1O95477 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA1O95477 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA1O95477 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.29■□□□□ 0.36
ABCA1O95477 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA1O95477 AL359736.2-201ENST00000621992 437 ntBASIC17.29■□□□□ 0.36
ABCA1O95477 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ABCA1O95477 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.29■□□□□ 0.36
ABCA1O95477 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA1O95477 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
ABCA1O95477 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCA1O95477 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCA1O95477 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCA1O95477 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 MIR1224-201ENST00000408193 85 ntBASIC17.28■□□□□ 0.36
ABCA1O95477 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.28■□□□□ 0.36
ABCA1O95477 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA1O95477 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA1O95477 LSM12P1-201ENST00000411836 588 ntBASIC17.27■□□□□ 0.36
ABCA1O95477 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.27■□□□□ 0.36
ABCA1O95477 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA1O95477 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.27■□□□□ 0.36
ABCA1O95477 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
ABCA1O95477 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA1O95477 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA1O95477 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
ABCA1O95477 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.27■□□□□ 0.35
ABCA1O95477 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.27■□□□□ 0.35
ABCA1O95477 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.27■□□□□ 0.35
ABCA1O95477 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ABCA1O95477 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ABCA1O95477 AC060766.5-201ENST00000590539 871 ntBASIC17.27■□□□□ 0.35
ABCA1O95477 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.35
ABCA1O95477 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ABCA1O95477 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.27■□□□□ 0.35
ABCA1O95477 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ABCA1O95477 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.26■□□□□ 0.35
ABCA1O95477 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ABCA1O95477 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ABCA1O95477 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 RPPH1-201ENST00000516869 333 ntBASIC17.26■□□□□ 0.35
ABCA1O95477 C1QBPP2-201ENST00000528754 825 ntBASIC17.26■□□□□ 0.35
ABCA1O95477 AC069544.1-201ENST00000609399 999 ntBASIC17.26■□□□□ 0.35
ABCA1O95477 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
ABCA1O95477 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ABCA1O95477 PNMA6B-201ENST00000538162 1200 ntBASIC17.26■□□□□ 0.35
ABCA1O95477 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.26■□□□□ 0.35
ABCA1O95477 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
ABCA1O95477 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.25■□□□□ 0.35
ABCA1O95477 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.25■□□□□ 0.35
ABCA1O95477 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ABCA1O95477 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.25■□□□□ 0.35
ABCA1O95477 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.25■□□□□ 0.35
ABCA1O95477 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.25■□□□□ 0.35
ABCA1O95477 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 AC061975.6-201ENST00000579045 1553 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms