Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.69■■□□□ 1.86
PTCD1O75127 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.69■■□□□ 1.86
PTCD1O75127 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.68■■□□□ 1.86
PTCD1O75127 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.68■■□□□ 1.86
PTCD1O75127 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC26.68■■□□□ 1.86
PTCD1O75127 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.68■■□□□ 1.86
PTCD1O75127 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.68■■□□□ 1.86
PTCD1O75127 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PTCD1O75127 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.68■■□□□ 1.86
PTCD1O75127 ME2-206ENST00000638410 2289 ntTSL 5 BASIC26.68■■□□□ 1.86
PTCD1O75127 ME2-210ENST00000639255 2262 ntTSL 5 BASIC26.68■■□□□ 1.86
PTCD1O75127 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC26.68■■□□□ 1.86
PTCD1O75127 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCD1O75127 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
PTCD1O75127 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.67■■□□□ 1.86
PTCD1O75127 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCD1O75127 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCD1O75127 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.67■■□□□ 1.86
PTCD1O75127 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC26.67■■□□□ 1.86
PTCD1O75127 Z99916.2-201ENST00000604037 246 ntBASIC26.67■■□□□ 1.86
PTCD1O75127 AC069544.1-201ENST00000609399 999 ntBASIC26.67■■□□□ 1.86
PTCD1O75127 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCD1O75127 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD1O75127 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC26.67■■□□□ 1.86
PTCD1O75127 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.66■■□□□ 1.86
PTCD1O75127 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 AC105020.6-201ENST00000621523 1217 ntBASIC26.66■■□□□ 1.86
PTCD1O75127 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.66■■□□□ 1.86
PTCD1O75127 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
PTCD1O75127 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCD1O75127 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC26.65■■□□□ 1.86
PTCD1O75127 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.65■■□□□ 1.86
PTCD1O75127 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC26.65■■□□□ 1.86
PTCD1O75127 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC26.65■■□□□ 1.86
PTCD1O75127 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD1O75127 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
PTCD1O75127 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
PTCD1O75127 AC116050.2-201ENST00000612102 1779 ntBASIC26.64■■□□□ 1.86
PTCD1O75127 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
PTCD1O75127 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
PTCD1O75127 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
PTCD1O75127 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
PTCD1O75127 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
PTCD1O75127 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.64■■□□□ 1.86
PTCD1O75127 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
PTCD1O75127 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
PTCD1O75127 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.64■■□□□ 1.85
PTCD1O75127 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.64■■□□□ 1.85
PTCD1O75127 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC26.63■■□□□ 1.85
PTCD1O75127 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
PTCD1O75127 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.63■■□□□ 1.85
PTCD1O75127 KLF2-202ENST00000592003 564 ntTSL 3 BASIC26.63■■□□□ 1.85
PTCD1O75127 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.63■■□□□ 1.85
PTCD1O75127 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC26.63■■□□□ 1.85
PTCD1O75127 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC26.63■■□□□ 1.85
PTCD1O75127 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCD1O75127 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.63■■□□□ 1.85
PTCD1O75127 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
PTCD1O75127 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.62■■□□□ 1.85
PTCD1O75127 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD1O75127 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
PTCD1O75127 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD1O75127 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD1O75127 MIR718-201ENST00000390190 70 ntBASIC26.62■■□□□ 1.85
PTCD1O75127 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD1O75127 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD1O75127 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.62■■□□□ 1.85
PTCD1O75127 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC26.62■■□□□ 1.85
PTCD1O75127 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms