Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
LDB3O75112 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.46■□□□□ 0.71
LDB3O75112 CDCA4P2-201ENST00000441182 718 ntBASIC19.46■□□□□ 0.71
LDB3O75112 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.46■□□□□ 0.71
LDB3O75112 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.46■□□□□ 0.71
LDB3O75112 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
LDB3O75112 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
LDB3O75112 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LDB3O75112 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.45■□□□□ 0.7
LDB3O75112 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.45■□□□□ 0.7
LDB3O75112 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LDB3O75112 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.45■□□□□ 0.7
LDB3O75112 AC231657.2-201ENST00000624556 255 ntBASIC19.45■□□□□ 0.7
LDB3O75112 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.45■□□□□ 0.7
LDB3O75112 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.45■□□□□ 0.7
LDB3O75112 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDB3O75112 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
LDB3O75112 AC007322.1-201ENST00000426983 750 ntBASIC19.44■□□□□ 0.7
LDB3O75112 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.44■□□□□ 0.7
LDB3O75112 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.44■□□□□ 0.7
LDB3O75112 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.44■□□□□ 0.7
LDB3O75112 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.44■□□□□ 0.7
LDB3O75112 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.44■□□□□ 0.7
LDB3O75112 AC121338.2-201ENST00000622535 1744 ntBASIC19.44■□□□□ 0.7
LDB3O75112 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.44■□□□□ 0.7
LDB3O75112 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDB3O75112 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 PLK5-205ENST00000642079 1969 ntBASIC19.43■□□□□ 0.7
LDB3O75112 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.43■□□□□ 0.7
LDB3O75112 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 AC116050.2-201ENST00000612102 1779 ntBASIC19.43■□□□□ 0.7
LDB3O75112 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.43■□□□□ 0.7
LDB3O75112 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.43■□□□□ 0.7
LDB3O75112 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.43■□□□□ 0.7
LDB3O75112 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDB3O75112 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.43■□□□□ 0.7
LDB3O75112 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LDB3O75112 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.42■□□□□ 0.7
LDB3O75112 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.42■□□□□ 0.7
LDB3O75112 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 AC007322.4-201ENST00000509611 723 ntBASIC19.42■□□□□ 0.7
LDB3O75112 AL591742.1-201ENST00000604433 565 ntBASIC19.42■□□□□ 0.7
LDB3O75112 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LDB3O75112 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.42■□□□□ 0.7
LDB3O75112 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDB3O75112 AC068338.2-201ENST00000563278 1430 ntBASIC19.42■□□□□ 0.7
LDB3O75112 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LDB3O75112 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.41■□□□□ 0.7
LDB3O75112 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDB3O75112 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms