Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.78■□□□□ 0.92
SHOX2O60902 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.78■□□□□ 0.92
SHOX2O60902 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.78■□□□□ 0.92
SHOX2O60902 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SHOX2O60902 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
SHOX2O60902 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHOX2O60902 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOX2O60902 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SHOX2O60902 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.77■□□□□ 0.92
SHOX2O60902 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOX2O60902 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOX2O60902 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.77■□□□□ 0.92
SHOX2O60902 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOX2O60902 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.77■□□□□ 0.92
SHOX2O60902 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOX2O60902 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
SHOX2O60902 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SHOX2O60902 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHOX2O60902 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHOX2O60902 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.76■□□□□ 0.91
SHOX2O60902 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.76■□□□□ 0.91
SHOX2O60902 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SHOX2O60902 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.76■□□□□ 0.91
SHOX2O60902 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SHOX2O60902 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOX2O60902 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SHOX2O60902 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.75■□□□□ 0.91
SHOX2O60902 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SHOX2O60902 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOX2O60902 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.75■□□□□ 0.91
SHOX2O60902 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.75■□□□□ 0.91
SHOX2O60902 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.74■□□□□ 0.91
SHOX2O60902 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SHOX2O60902 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
SHOX2O60902 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.74■□□□□ 0.91
SHOX2O60902 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOX2O60902 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.73■□□□□ 0.91
SHOX2O60902 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.73■□□□□ 0.91
SHOX2O60902 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.73■□□□□ 0.91
SHOX2O60902 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.73■□□□□ 0.91
SHOX2O60902 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.73■□□□□ 0.91
SHOX2O60902 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.73■□□□□ 0.91
SHOX2O60902 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.73■□□□□ 0.91
SHOX2O60902 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
SHOX2O60902 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.73■□□□□ 0.91
SHOX2O60902 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHOX2O60902 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 AC093484.2-201ENST00000580996 2166 ntBASIC20.72■□□□□ 0.91
SHOX2O60902 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHOX2O60902 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms